#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Utility objects.
:copyright:
Lion Krischer (krischer@geophysik.uni-muenchen.de), 2013
:license:
GNU Lesser General Public License, Version 3
(https://www.gnu.org/copyleft/lesser.html)
"""
import copy
import re
import warnings
from textwrap import TextWrapper
from obspy import UTCDateTime
from obspy.core.util.base import ComparingObject
from obspy.core.util.decorator import deprecated_keywords
from obspy.core.util.deprecation_helpers import ObsPyDeprecationWarning
from obspy.core.util.obspy_types import (FloatWithUncertaintiesAndUnit,
FloatWithUncertaintiesFixedUnit)
[docs]
class BaseNode(ComparingObject):
"""
From the StationXML definition:
A base node type for derivation of: Network, Station and Channel
types.
The parent class for the network, station and channel classes.
"""
[docs]
def __init__(self, code, description=None, comments=None, start_date=None,
end_date=None, restricted_status=None, alternate_code=None,
historical_code=None, data_availability=None,
identifiers=None, source_id=None):
"""
:type code: str
:param code: The SEED network, station, or channel code
:type description: str, optional
:param description: A description of the resource
:type comments: list of :class:`Comment`, optional
:param comments: An arbitrary number of comments to the resource
:type start_date: :class:`~obspy.core.utcdatetime.UTCDateTime`,
optional
:param start_date: The start date of the resource
:type end_date: :class:`~obspy.core.utcdatetime.UTCDateTime`, optional
:param end_date: The end date of the resource
:type restricted_status: str, optional
:param restricted_status: The restriction status
:type alternate_code: str, optional
:param alternate_code: A code used for display or association,
alternate to the SEED-compliant code.
:type historical_code: str, optional
:param historical_code: A previously used code if different from the
current code.
:type data_availability:
:class:`~obspy.core.inventory.util.DataAvailability`
:param data_availability: Information about time series availability
for the network/station/channel.
:type identifiers: list[str], optional
:param identifiers: Persistent identifiers for network/station/channel
(schema version >=1.1). URIs are in general composed of a 'scheme'
and a 'path' (optionally with additional components), the two of
which separated by a colon.
:type source_id: str, optional
:param source_id: A data source identifier in URI form
(schema version >=1.1). URIs are in general composed of a 'scheme'
and a 'path' (optionally with additional components), the two of
which separated by a colon.
"""
self.code = code
self.comments = comments or []
self.description = description
self.start_date = start_date
self.end_date = end_date
self.restricted_status = restricted_status
self.alternate_code = alternate_code
self.historical_code = historical_code
self.data_availability = data_availability
self.identifiers = identifiers or []
self.source_id = source_id
@property
def code(self):
return self._code
@code.setter
def code(self, value):
if value is None:
msg = "A code is required"
raise ValueError(msg)
self._code = str(value).strip()
@property
def source_id(self):
return self._source_id
@source_id.setter
def source_id(self, value):
if value:
_warn_on_invalid_uri(value)
self._source_id = value.strip()
else:
self._source_id = None
@property
def identifiers(self):
return self._identifiers
@identifiers.setter
def identifiers(self, value):
if not hasattr(value, "__iter__"):
msg = "identifiers needs to be an iterable, e.g. a list."
raise ValueError(msg)
# make sure to unwind actual iterators, or the just might get exhausted
# at some point
identifiers = [identifier for identifier in value]
for identifier in identifiers:
_warn_on_invalid_uri(identifier)
self._identifiers = identifiers
@property
def alternate_code(self):
"""
From the StationXML definition:
A code used for display or association, alternate to the
SEED-compliant code.
"""
return self._alternate_code
@alternate_code.setter
def alternate_code(self, value):
if value:
self._alternate_code = value.strip()
else:
self._alternate_code = None
@property
def historical_code(self):
"""
From the StationXML definition:
A previously used code if different from the current code.
"""
return self._historical_code
@historical_code.setter
def historical_code(self, value):
if value:
self._historical_code = value.strip()
else:
self._historical_code = None
[docs]
def copy(self):
"""
Returns a deepcopy of the object.
:rtype: same class as original object
:return: Copy of current object.
.. rubric:: Examples
1. Create a station object and copy it
>>> from obspy import read_inventory
>>> sta = read_inventory()[0][0]
>>> sta2 = sta.copy()
The two objects are not the same:
>>> sta is sta2
False
But they have equal data (before applying further processing):
>>> sta == sta2
True
2. The following example shows how to make an alias but not copy the
data. Any changes on ``st3`` would also change the contents of
``st``.
>>> sta3 = sta
>>> sta is sta3
True
>>> sta == sta3
True
"""
return copy.deepcopy(self)
[docs]
def is_active(self, time=None, starttime=None, endtime=None):
"""
Checks if the item was active at some given point in time (`time`)
and/or if it was active at some point during a certain time range
(`starttime`, `endtime`).
.. note::
If none of the time constraints is specified the result will always
be `True`.
:type time: :class:`~obspy.core.utcdatetime.UTCDateTime`
:param time: Only include networks/stations/channels active at given
point in time.
:type starttime: :class:`~obspy.core.utcdatetime.UTCDateTime`
:param starttime: Only include networks/stations/channels active at or
after given point in time (i.e. channels ending before given time
will not be shown).
:type endtime: :class:`~obspy.core.utcdatetime.UTCDateTime`
:param endtime: Only include networks/stations/channels active before
or at given point in time (i.e. channels starting after given time
will not be shown).
:rtype: bool
:returns: `True`/`False` depending on whether the item matches the
specified time criteria.
"""
if time is not None:
if self.start_date is not None and time < self.start_date:
return False
if self.end_date is not None and time > self.end_date:
return False
if starttime is not None and self.end_date is not None:
if starttime > self.end_date:
return False
if endtime is not None and self.start_date is not None:
if endtime < self.start_date:
return False
return True
[docs]
class DataAvailability(ComparingObject):
"""
A description of time series data availability. This information should
be considered transient and is primarily useful as a guide for
generating time series data requests. The information for a
DataAvailability (time) span may be specific to the time range used in a
request that resulted in the document or limited to the availability of
data within the request range. These details may or may not be
retained when synchronizing metadata between data centers.
Spans of data are represented by a start time, end time, number of segments
contained in the span and maximum time tear within a certain span.
:param start: Start of time extent
:type start: :class:`~obspy.core.utcdatetime.UTCDateTime`
:param end: End of time extent
:type end: :class:`~obspy.core.utcdatetime.UTCDateTime`
:param spans: Time spans with detail information
:type spans: list of :class:`DataAvailabilitySpan`
"""
[docs]
def __init__(self, start=None, end=None, spans=None):
start = start is not None and UTCDateTime(start)
self.start = start
end = end is not None and UTCDateTime(end)
self.end = end
self.spans = spans or []
@property
def spans(self):
return self._spans
@spans.setter
def spans(self, value):
msg = 'Data availability spans must be of DataAvailabilitySpan type.'
try:
for item in value:
if not isinstance(item, DataAvailabilitySpan):
raise TypeError
except TypeError:
raise TypeError(msg)
self._spans = value
[docs]
def __str__(self):
if not self.spans:
span_info = 'no time span information'
else:
span_info = '%d time spans with details' % len(self.spans)
return "Data Availability from %s to %s, %s." % (self.start,
self.end, span_info)
[docs]
def _repr_pretty_(self, p, cycle):
p.text(str(self))
[docs]
class DataAvailabilitySpan(ComparingObject):
"""
Data availability spans are represented by a start time, end time, number
of segments contained in the span and maximum time tear within a certain
span.
:param start: Start of time span
:type start: :class:`~obspy.core.utcdatetime.UTCDateTime`
:param end: End of time span
:type end: :class:`~obspy.core.utcdatetime.UTCDateTime`
:param number_of_segments: The number of continuous time series segments
contained in the specified time range. A value of 1 indicates that the
time series is continuous from start to end.
:type number_of_segments: int
:param maximum_time_tear: The maximum time tear (gap or overlap) in seconds
between time series segments in the specified range.
:type maximum_time_tear: float
"""
[docs]
def __init__(self, start, end, number_of_segments, maximum_time_tear=None):
self.start = UTCDateTime(start)
self.end = UTCDateTime(end)
self.number_of_segments = number_of_segments
self.maximum_time_tear = maximum_time_tear
[docs]
def __str__(self):
if self.maximum_time_tear is None:
tear_info = 'maximum time tear not specified'
elif abs(self.maximum_time_tear) < 0.1:
tear_info = '%.6fs maximum time tear'
elif abs(self.maximum_time_tear) < 2:
tear_info = '%.3fs maximum time tear'
elif abs(self.maximum_time_tear) < 10:
tear_info = '%.1fs maximum time tear'
else:
tear_info = '%.0fs maximum time tear'
return "Data Availability Span: %d segments from %s to %s, %s." % (
self.number_of_segments, self.start, self.end, tear_info)
[docs]
def _repr_pretty_(self, p, cycle):
p.text(str(self))
[docs]
class Equipment(ComparingObject):
"""
An object containing a detailed description of an equipment.
"""
[docs]
def __init__(self, type=None, description=None, manufacturer=None,
vendor=None, model=None, serial_number=None,
installation_date=None, removal_date=None,
calibration_dates=None, resource_id=None):
"""
:type type: str
:param type: The equipment type
:type description: str
:param description: Description of the equipment
:type manufacturer: str
:param manufacturer: The manufacturer of the equipment
:type vendor: str
:param vendor: The vendor of the equipment
:type model: str
:param model: The model of the equipment
:type serial_number: str
:param serial_number: The serial number of the equipment
:type installation_date: :class:`~obspy.core.utcdatetime.UTCDateTime`
:param installation_date: The installation date of the equipment
:type removal_date: :class:`~obspy.core.utcdatetime.UTCDateTime`
:param removal_date: The removal data of the equipment
:type calibration_dates: list of
:class:`~obspy.core.utcdatetime.UTCDateTime`
:param calibration_dates: A list with all calibration dates of the
equipment.
:type resource_id: str
:param resource_id: This field contains a string that should serve as a
unique resource identifier. This identifier can be interpreted
differently depending on the data center/software that generated
the document. Also, we recommend to use something like
GENERATOR:Meaningful ID. As a common behavior equipment with the
same ID should contain the same information/be derived from the
same base instruments.
"""
self.type = type
self.description = description
self.manufacturer = manufacturer
self.vendor = vendor
self.model = model
self.serial_number = serial_number
self.installation_date = installation_date
self.removal_date = removal_date
self.calibration_dates = calibration_dates or []
self.resource_id = resource_id
@property
def installation_date(self):
return self._installation_date
@installation_date.setter
def installation_date(self, value):
if value is None or isinstance(value, UTCDateTime):
self._installation_date = value
return
self._installation_date = UTCDateTime(value)
@property
def removal_date(self):
return self._removal_date
@removal_date.setter
def removal_date(self, value):
if value is None or isinstance(value, UTCDateTime):
self._removal_date = value
return
self._removal_date = UTCDateTime(value)
[docs]
def __str__(self):
ret = ("Equipment:\n"
"\tType: {type}\n"
"\tDescription: {description}\n"
"\tManufacturer: {manufacturer}\n"
"\tVendor: {vendor}\n"
"\tModel: {model}\n"
"\tSerial number: {serial_number}\n"
"\tInstallation date: {installation_date}\n"
"\tRemoval date: {removal_date}\n"
"\tResource id: {resource_id}\n"
"\tCalibration Dates:\n")
for calib_date in self.calibration_dates:
ret += "\t\t%s\n" % calib_date
ret = ret.format(**self.__dict__)
return ret
[docs]
def _repr_pretty_(self, p, cycle):
p.text(str(self))
[docs]
class Operator(ComparingObject):
"""
An operating agency and associated contact persons. If there are multiple
operators, each one should be encapsulated within an Operator object. Since
the Contact element is a generic type that represents any contact person,
it also has its own optional Agency element.
"""
[docs]
@deprecated_keywords({"agencies": "agency"})
def __init__(self, agency, contacts=None, website=None):
"""
:type agency: str
:param agency: The agency of the operator.
:type contacts: list of :class:`Person`, optional
:param contacts: One or more contact persons.
:type website: str, optional
:param website: The website.
"""
self.agency = agency
self.contacts = contacts or []
self.website = website
@property
def agency(self):
return self._agency
@agency.setter
def agency(self, value):
# check if a list of agencies was provided, which is not supported
# anymore (if we get a string, types of provided value and any index
# will match)
if not isinstance(value[0], type(value)):
msg = ("Only a single agency can be assigned to Operator due to "
"the changes in StationXML 1.1. Subsequent agencies are "
"ignored.")
warnings.warn(msg, ObsPyDeprecationWarning)
value = value[0]
self._agency = value
@property
def agencies(self):
msg = ("Attribute 'agencies' (holding a list of strings as Agencies) "
"is deprecated in favor of 'agency' which now holds a single "
"string (following changes in StationXML 1.1) and might be "
"removed in the future. Returning a list built up of the "
"single agency or an empty list if agency is None.")
warnings.warn(msg, ObsPyDeprecationWarning)
if self.agency is not None:
return [self.agency]
return []
@agencies.setter
def agencies(self, value):
msg = ("Attribute 'agencies' (holding a list of strings as Agencies) "
"is deprecated in favor of 'agency' which now holds a single "
"string (following changes in StationXML 1.1) and might be "
"removed in the future. Setting 'agency' with first item in "
"provided list.")
warnings.warn(msg, ObsPyDeprecationWarning)
if not hasattr(value, "__iter__") or len(value) < 1:
msg = ("agencies needs to be iterable, e.g. a list, and contain "
"at least one entry.")
raise ValueError(msg)
self._agency = value[0]
@property
def contacts(self):
return self._contacts
@contacts.setter
def contacts(self, value):
if not hasattr(value, "__iter__"):
msg = ("contacts needs to be iterable, e.g. a list.")
raise ValueError(msg)
self._contacts = value
[docs]
class Person(ComparingObject):
"""
From the StationXML definition:
Representation of a person's contact information. A person can belong
to multiple agencies and have multiple email addresses and phone
numbers.
"""
email_pattern = re.compile(r"[\w\.\-_]+@[\w\.\-_]+")
[docs]
def __init__(self, names=None, agencies=None, emails=None, phones=None):
"""
:type names: list[str], optional
:param names: Self-explanatory. Multiple names allowed.
:type agencies: list[str], optional
:param agencies: Self-explanatory. Multiple agencies allowed.
:type emails: list[str], optional
:param emails: Self-explanatory. Multiple emails allowed.
:type phones: list[:class:`PhoneNumber`], optional
:param phones: Self-explanatory. Multiple phone numbers allowed.
"""
self.names = names or []
self.agencies = agencies or []
self.emails = emails or []
self.phones = phones or []
@property
def names(self):
return self._names
@names.setter
def names(self, value):
if not hasattr(value, "__iter__"):
msg = "names needs to be iterable, e.g. a list."
raise ValueError(msg)
self._names = value
@property
def agencies(self):
return self._agencies
@agencies.setter
def agencies(self, value):
if not hasattr(value, "__iter__"):
msg = "agencies needs to be iterable, e.g. a list."
raise ValueError(msg)
self._agencies = value
@property
def emails(self):
return self._emails
@emails.setter
def emails(self, values):
if not hasattr(values, "__iter__"):
msg = "emails needs to be iterable, e.g. a list."
raise ValueError(msg)
for value in values:
if re.match(self.email_pattern, value) is None:
msg = ("emails needs to match the pattern "
r"'[\w\.\-_]+@[\w\.\-_]+'")
raise ValueError(msg)
self._emails = values
@property
def phones(self):
return self._phones
@phones.setter
def phones(self, values):
if not hasattr(values, "__iter__"):
msg = "phones needs to be iterable, e.g. a list."
raise ValueError(msg)
self._phones = values
[docs]
class PhoneNumber(ComparingObject):
"""
A simple object representing a phone number.
"""
phone_pattern = re.compile("^[0-9]+-[0-9]+$")
[docs]
def __init__(self, area_code, phone_number, country_code=None,
description=None):
"""
:type area_code: int
:param area_code: The area code.
:type phone_number: str
:param phone_number: The phone number minus the country and area code.
Must be in the form "[0-9]+-[0-9]+", e.g. 1234-5678.
:type country_code: int, optional
:param country_code: The country code.
:type description: str, optional
:param description: Any additional information.
"""
self.country_code = country_code
self.area_code = area_code
self.phone_number = phone_number
self.description = description
@property
def phone_number(self):
return self._phone_number
@phone_number.setter
def phone_number(self, value):
if re.match(self.phone_pattern, value) is None:
msg = "phone_number needs to match the pattern '[0-9]+-[0-9]+'"
raise ValueError(msg)
self._phone_number = value
[docs]
class ExternalReference(ComparingObject):
"""
From the StationXML definition:
This type contains a URI and description for external data that users
may want to reference in StationXML.
"""
[docs]
def __init__(self, uri, description):
"""
:type uri: str
:param uri: The URI to the external data.
:type description: str
:param description: A description of the external data.
"""
self.uri = uri
self.description = description
[docs]
class Site(ComparingObject):
"""
From the StationXML definition:
Description of a site location using name and optional geopolitical
boundaries (country, city, etc.).
"""
[docs]
def __init__(self, name="", description=None, town=None, county=None,
region=None, country=None):
"""
:type name: str
:param name: The commonly used name of this station, equivalent to the
SEED blockette 50, field 9.
:type description: str, optional
:param description: A longer description of the location of this
station, e.g. "NW corner of Yellowstone National Park" or "20
miles west of Highway 40."
:type town: str, optional
:param town: The town or city closest to the station.
:type county: str, optional
:param county: The county.
:type region: str, optional
:param region: The state, province, or region of this site.
:type country: str, optional
:param country: The country.
"""
self.name = name
self.description = description
self.town = town
self.county = county
self.region = region
self.country = country
[docs]
def __str__(self):
ret = ("Site: {name}\n"
"\tDescription: {description}\n"
"\tTown: {town}\n"
"\tCounty: {county}\n"
"\tRegion: {region}\n"
"\tCountry: {country}")
ret = ret.format(
name=self.name, description=self.description,
town=self.town, county=self.county, region=self.region,
country=self.country)
return ret
[docs]
def _repr_pretty_(self, p, cycle):
p.text(str(self))
[docs]
class Latitude(FloatWithUncertaintiesFixedUnit):
"""
Latitude object
:type value: float
:param value: Latitude value
:type lower_uncertainty: float
:param lower_uncertainty: Lower uncertainty (aka minusError)
:type upper_uncertainty: float
:param upper_uncertainty: Upper uncertainty (aka plusError)
:type datum: str
:param datum: Datum for latitude coordinate
:type measurement_method: str
:param measurement_method: Method used in the measurement.
"""
_minimum = -90
_maximum = 90
_unit = "DEGREES"
[docs]
def __init__(self, value, lower_uncertainty=None, upper_uncertainty=None,
datum=None):
"""
"""
self.datum = datum
super(Latitude, self).__init__(
value, lower_uncertainty=lower_uncertainty,
upper_uncertainty=upper_uncertainty)
[docs]
class Longitude(FloatWithUncertaintiesFixedUnit):
"""
Longitude object
:type value: float
:param value: Longitude value
:type lower_uncertainty: float
:param lower_uncertainty: Lower uncertainty (aka minusError)
:type upper_uncertainty: float
:param upper_uncertainty: Upper uncertainty (aka plusError)
:type datum: str
:param datum: Datum for longitude coordinate
:type measurement_method: str
:param measurement_method: Method used in the measurement.
"""
_minimum = -180
_maximum = 180
unit = "DEGREES"
[docs]
def __init__(self, value, lower_uncertainty=None, upper_uncertainty=None,
datum=None):
"""
"""
self.datum = datum
super(Longitude, self).__init__(
value, lower_uncertainty=lower_uncertainty,
upper_uncertainty=upper_uncertainty)
[docs]
class Distance(FloatWithUncertaintiesAndUnit):
"""
Distance object
:type value: float
:param value: Distance value
:type lower_uncertainty: float
:param lower_uncertainty: Lower uncertainty (aka minusError)
:type upper_uncertainty: float
:param upper_uncertainty: Upper uncertainty (aka plusError)
:type unit: str
:param unit: Unit for distance measure.
:type measurement_method: str
:param measurement_method: Method used in the measurement.
"""
[docs]
def __init__(self, value, lower_uncertainty=None, upper_uncertainty=None,
unit="METERS"):
super(Distance, self).__init__(
value, lower_uncertainty=lower_uncertainty,
upper_uncertainty=upper_uncertainty)
self._unit = unit
[docs]
class Azimuth(FloatWithUncertaintiesFixedUnit):
"""
Azimuth object
:type value: float
:param value: Azimuth value
:type lower_uncertainty: float
:param lower_uncertainty: Lower uncertainty (aka minusError)
:type upper_uncertainty: float
:param upper_uncertainty: Upper uncertainty (aka plusError)
:type measurement_method: str
:param measurement_method: Method used in the measurement.
"""
_minimum = 0
_maximum = 360
unit = "DEGREES"
[docs]
class Dip(FloatWithUncertaintiesFixedUnit):
"""
Dip object
:type value: float
:param value: Dip value
:type lower_uncertainty: float
:param lower_uncertainty: Lower uncertainty (aka minusError)
:type upper_uncertainty: float
:param upper_uncertainty: Upper uncertainty (aka plusError)
:type measurement_method: str
:param measurement_method: Method used in the measurement.
"""
_minimum = -90
_maximum = 90
unit = "DEGREES"
[docs]
class ClockDrift(FloatWithUncertaintiesFixedUnit):
"""
ClockDrift object
:type value: float
:param value: ClockDrift value
:type lower_uncertainty: float
:param lower_uncertainty: Lower uncertainty (aka minusError)
:type upper_uncertainty: float
:param upper_uncertainty: Upper uncertainty (aka plusError)
:type measurement_method: str
:param measurement_method: Method used in the measurement.
"""
_minimum = 0
unit = "SECONDS/SAMPLE"
[docs]
class SampleRate(FloatWithUncertaintiesFixedUnit):
"""
SampleRate object
:type value: float
:param value: ClockDrift value
:type lower_uncertainty: float
:param lower_uncertainty: Lower uncertainty (aka minusError)
:type upper_uncertainty: float
:param upper_uncertainty: Upper uncertainty (aka plusError)
:type measurement_method: str
:param measurement_method: Method used in the measurement.
"""
unit = "SAMPLES/S"
[docs]
class Frequency(FloatWithUncertaintiesFixedUnit):
"""
Frequency object
:type value: float
:param value: Frequency value
:type lower_uncertainty: float
:param lower_uncertainty: Lower uncertainty (aka minusError)
:type upper_uncertainty: float
:param upper_uncertainty: Upper uncertainty (aka plusError)
:type measurement_method: str
:param measurement_method: Method used in the measurement.
"""
unit = "HERTZ"
[docs]
class Angle(FloatWithUncertaintiesFixedUnit):
"""
Angle object
:type value: float
:param value: Angle value
:type lower_uncertainty: float
:param lower_uncertainty: Lower uncertainty (aka minusError)
:type upper_uncertainty: float
:param upper_uncertainty: Upper uncertainty (aka plusError)
:type measurement_method: str
:param measurement_method: Method used in the measurement.
"""
_minimum = -360
_maximum = 360
unit = "DEGREES"
[docs]
def _unified_content_strings(contents):
contents_unique = sorted(set(contents), key=_seed_id_keyfunction)
contents_counts = [
(item, contents.count(item)) for item in contents_unique]
items = [item if count == 1 else "{} ({}x)".format(item, count)
for item, count in contents_counts]
return items
[docs]
def _unified_content_strings_expanded(contents):
contents2 = [["." + item.location_code, item.code,
item.sample_rate, item.start_date, item.end_date,
item.depth]
for item in contents]
# sorts by sample rate, startdate, and channel code (ZNE321)
contents2 = sorted(contents2, key=lambda x: (x[2], x[1], x[3]),
reverse=True)
uniques = []
for u in [[e[0], e[1][0:2], e[3], e[4], e[5]] for e in contents2]:
if u not in uniques:
uniques.append(u)
contents3 = []
for u in uniques:
c = [e for e in contents2 if
[e[0], e[1][0:2], e[3], e[4], e[5]] == u]
test = [[e[0], e[2], e[3], e[4], e[5]] for e in c]
if all(test[0] == x for x in test) and len(test) > 1:
mergedch = u[1] + '[' \
+ ''.join(map(str, [e[1][-1] for e in c])) + ']'
c[0][1] = mergedch
contents3.append(c[0])
contents3 = sorted(contents3, key=lambda x: (x[2], x[3], x[5]),
reverse=True)
items = []
for item in contents3:
if item[5] != 0:
items.append("{l: >5s}.{c: <9s}{sr: 6.1f} Hz {start: <.10s}"
" to {end: <.10s} Depth {ldepth: <.1f} m"
.format(l=item[0], c=item[1], sr=item[2],
start=str(item[3]), end=str(item[4]),
ldepth=item[5]))
else:
items.append("{l: >5s}.{c: <9s}{sr: 6.1f} Hz {start: <.10s}"
" to {end: <.10s}".format(l=item[0], c=item[1],
sr=item[2],
start=str(item[3]),
end=str(item[4])))
return items
# make TextWrapper only split on colons, so that we avoid splitting in between
# e.g. network code and network code occurence count (can be controlled with
# class attributes).
# Also avoid lines starting with ", " (need to patch the class for this)
[docs]
class InventoryTextWrapper(TextWrapper):
wordsep_re = re.compile(r'(, )')
wordsep_simple_re = re.compile(r'(, )')
[docs]
def _wrap_chunks(self, *args, **kwargs):
"""
"""
# the following doesn't work somehow (likely because of future??)
# lines = super(InventoryTextWrapper, self)._wrap_chunks(
# *args, **kwargs)
lines = TextWrapper._wrap_chunks(self, *args, **kwargs)
lines = [re.sub(r'([\b\s]+), (.*)', r'\1\2', line, count=1)
for line in lines]
return lines
[docs]
def _textwrap(text, *args, **kwargs):
return InventoryTextWrapper(*args, **kwargs).wrap(text)
[docs]
def _seed_id_keyfunction(x):
"""
Keyfunction to use in sorting two (partial) SEED IDs
Assumes that the last (or only) "."-separated part is a channel code.
Assumes the last character is a the component code and sorts it
"Z"-"N"-"E"-others_lexical.
"""
# for comparison we build a list of 5 SEED code pieces:
# [network, station, location, band+instrument, component]
# with partial codes (i.e. not 4 fields after splitting at dots),
# we go with the following assumptions (these seem a bit random, but that's
# what can be encountered in string representations of the Inventory object
# hierarchy):
# - no dot means network code only (e.g. "IU")
# - one dot means network.station code only (e.g. "IU.ANMO")
# - two dots means station.location.channel code only (e.g. "ANMO.10.BHZ")
# - three dots: full SEED ID (e.g. "IU.ANMO.10.BHZ")
# - more dots: sort after any of the previous, plain lexical sort
# if no "." in the string: assume it's a network code
# split to get rid of the description that that is added to networks and
# stations which might also contain dots.
number_of_dots = x.strip().split()[0].count(".")
x = x.upper()
if number_of_dots == 0:
x = [x] + [""] * 4
elif number_of_dots == 1:
x = x.split(".") + [""] * 3
elif number_of_dots in (2, 3):
x = x.split(".")
if number_of_dots == 2:
x = [""] + x
# split channel code into band+instrument code and component code
x = x[:-1] + [x[-1][:-1], x[-1] and x[-1][-1] or '']
# special comparison for component code, convert "ZNE" to integers
# which compare less than any character
comp = "ZNE".find(x[-1])
# last item is component code, either the original 1-char string, or an
# int from 0-2 if any of "ZNE". Python3 does not allow comparison of
# int and string anymore (Python 2 always compares ints smaller than
# any string), so we need to work around this by making this last item
# a tuple with first item False for ints and True for strings.
if comp >= 0:
x[-1] = (False, comp)
else:
x[-1] = (True, x[-1])
# all other cases, just convert the upper case string to a single item
# list - it will compare greater than any of the split lists.
else:
x = [x, ]
return x
[docs]
def _response_plot_label(network, station, channel, label_epoch_dates):
label = ".".join((network.code, station.code,
channel.location_code, channel.code))
if label_epoch_dates:
start = channel.start_date
if start is None:
start = 'open'
else:
start = str(start.date)
end = channel.end_date
if end is None:
end = 'open'
else:
end = str(end.date)
label += '\n{} -- {}'.format(start, end)
return label
[docs]
def _is_valid_uri(uri):
if ':' not in uri:
return False
scheme, path = uri.split(':', 1)
if any(not x.strip() for x in (scheme, path)):
return False
return True
[docs]
def _warn_on_invalid_uri(uri):
if not _is_valid_uri(uri):
msg = f"Given string seems to not be a valid URI: '{uri}'"
warnings.warn(msg)
[docs]
def _add_resolve_seedid_doc(func):
"""
The following parameters deal with the problem, that the format
only stores station names for the picks, but the Pick object expects
a SEED id. The SEED id is looked up for every pick by the
following procedure:
1. look at seedid_map for a direct station name match and use the specified
template
2. if 1 did not succeed, look if the station is present in inventory and
use its first channel as template
3. if 1 and 2 did not succeed, use specified default template
(default_seedid)
:param str filename: File or file-like object in text mode.
:type inventory: :class:`~obspy.core.inventory.inventory.Inventory`
:param inventory: Inventory used to retrieve network code, location code
and channel code of stations (SEED id).
:param dict seedid_map: Default templates for each station
(example: `seedid_map={'MOX': 'GR.{}..HH{}'`).
The values must contain three dots and two `{}` which are
substituted by station code and component.
:param str default_seedid: Default SEED id template.
The value must contain three dots and two `{}` which are
substituted by station code and component.
:param bool warn: Whether or not to warn on failed look ups
(no matching data found or ambiguous results) in the inventory
"""
if func.__doc__ is not None:
func.__doc__ = func.__doc__ + __doc__
return func
[docs]
def _add_resolve_seedid_ph2comp_doc(func):
"""
:param dict ph2comp: mapping of phases to components if format does not
specify the component or if the component ends with '?'. Set it to
`None` for no mapping of components. (default: {'P': 'Z', 'S': 'N'})
"""
if func.__doc__ is not None:
func.__doc__ = func.__doc__ + __doc__
return func
[docs]
def _resolve_seedid(station, component, inventory=None,
time=None, seedid_map=None, default_seedid=None,
key='{sta.code}', id_map=None, id_default=None,
phase=None, ph2comp={'P': 'Z', 'S': 'N'},
unused_kwargs=False, warn=True, **kwargs):
if not unused_kwargs and len(kwargs) > 0:
raise ValueError(f'Unexpected arguments: {kwargs}')
if id_map is not None: # backwards compatibility
seedid_map = id_map
if id_default is not None: # backwards compatibility
default_seedid = id_default
if phase is not None and ph2comp is not None and (
component == '' or component.endswith('?')):
component = component[:-1] + ph2comp.get(phase.upper(), '')
seedid = None
if seedid_map is not None and station in seedid_map:
seedid = seedid_map[station].format(station, component)
elif inventory is not None:
seedid = _resolve_seedid_from_inventory(
station, component, inventory, time=time, warn=warn)
if seedid is None and default_seedid is not None:
seedid = default_seedid.format(station, component)
if seedid is None:
return '', station, None, component
else:
return tuple(seedid.split('.'))
[docs]
def _resolve_seedid_from_inventory(
station, component, inventory, time=None, network=None,
location=None, warn=True):
"""
Return a (Network, Station, Location, Channel) tuple.
Given a station and channel code and station metadata (and optionally a
certain point in time), try to resolve the full SEED ID, i.e. fill in
a missing/unknown network and/or location code.
If no matching data is found in metadata or if ambiguities in the station
metadata are encountered, returns ``None`` for network and/or location
code.
Simply returns the given (Network, Station, Location, Channel) input if
*both* ``location`` and ``network`` are already specified.
:type station: str
:param station: Station code to look up.
:type channel: str
:param channel: Channel code to look up.
:type inventory: :class:`~obspy.core.inventory.inventory.Inventory`
:param inventory: Station metadata to use for look up of missing parts of
the full SEED ID.
:type time: :class:`~obspy.core.utcdatetime.UTCDateTime`
:param time: Optionally restrict lookup from metadata to given timestamp.
:type network: str
:param network: Also specify network code for lookup (not intended to be
used together with ``location``, see above)
:type location: str
:param location: Also specify location code for lookup (not intended to be
used together with ``network``, see above)
:type warn: bool
:param warn: Whether or not to warn on failed look ups (no matching data
found or ambiguous results) that return some ``None``s.
:rtype: str
:returns: SEED id string
"""
inv = inventory.select(station=station, channel='*' + component, time=time,
network=network, location=location,
keep_empty=False)
if len(inv.networks) != 1 or len(inv.networks[0].stations) == 0:
if warn:
msg = ('No matching metadata found for station '
f'{station}, component {component}.')
warnings.warn(msg)
return
net = inv.networks[0]
seedids = [f'{net.code}.{station}.{cha.location_code}.{cha.code}'
for cha in net.stations[0] if cha.is_active(time=time)]
seedids = [id_[:len(id_) - len(component)] + component for id_ in seedids]
if len(seedids) == 0:
if warn:
msg = ('No matching metadata found for station '
f'{station}, component {component}.')
warnings.warn(msg)
return
if len(set(seedids)) > 1 and warn:
msg = ('Multiple SEED ids found for station '
f'{station}, component {component}. Use first.')
warnings.warn(msg)
return seedids.pop(0)
if __name__ == '__main__':
import doctest
doctest.testmod(exclude_empty=True)